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Macromolecule Features
Macromolecule:
EC Number:
Uniprot id:
Molecule Type:
Any
Protein
Dna
Rna
Protein_D
Saccharide
Hybrid
other
Organism:
PDB Structure Features
Max Resolution:
Any
< 0.6 Å
< 1 Å
< 1.6 Å
< 2 Å
< 2.6 Å
< 3 Å
PDB deposition (from):
PDB deposition (to):
Site Features
Site Type:
Any
Mononuclear
Dinuclear
Trinuclear
Tetranuclear
Pentanuclear
Hexanuclear
Heptanuclear
Octanuclear
Nonanuclear
Decanuclear
Multinuclear (Num lig > 1)
Cath id:
Scop id:
Pfam domain:
Representatives only:
Yes
No
Metal features
Metal:
Any
Ac
Ag
Al
Am
Au
Ba
Be
Bi
Bk
Ca
Cd
Ce
Cf
Cm
Co
Cr
Cs
Cu
Db
Dy
Er
Es
Eu
Fe
Fm
Fr
Ga
Gd
Ge
Hf
Hg
Ho
In
Ir
K
La
Li
Lr
Lu
Md
Mg
Mn
Mo
Na
Nb
Nd
Ni
No
Np
Os
Pa
Pb
Pd
Pm
Po
Pr
Pt
Pu
Ra
Rb
Re
Rf
Rh
Ru
Sb
Sc
Sg
Sm
Sn
Sr
Ta
Tb
Tc
Th
Ti
Tl
Tm
U
V
W
Y
Yb
Zn
Zr
Geometry:
Any
square pyramid
trigonal bipyramid with a vacancy (equatorial)
trigonal prism, square-face bicapped
pentagonal bipyramid with a vacancy (equatorial)
hexagonal bipyramid with a vacancy (axial)
trigonal bipyramid
trigonal prism, square-face tricapped
square plane with a vacancy
pentagonal bipyramid with a vacancy (axial)
trigonal bipyramid with a vacancy (axial)
square plane
square pyramid with a vacancy (equatorial)
cube
hexagonal bipyramid with a vacancy (equatorial)
square antiprism
tetrahedron
square antiprism with a vacancy
tetrahedron with a vacancy
trigonal plane
cube with a vacancy
octahedron, trans-bicapped
trigonal prism, square-face monocapped
pentagonal bipyramid
linear
square antiprism, square-face monocapped
octahedron, face monocapped
octahedron
trigonal prism with a vacancy
trigonal prism, square-face monocapped with a vacancy (capped face)
hexagonal bipyramid
trigonal prism, triangular-face bicapped
trigonal prism
octahedron, face monocapped with a vacancy (capped face)
trigonal prism, square-face monocapped with a vacancy (non-capped edge)
octahedron, face monocapped with a vacancy (non-capped face)
irregular
trigonal plane with a vacancy
Coordination number:
Pattern:
First Sphere features(type of ligands)
Ligand Residue:
Any
Alanine
Arginine
Asparagine
Aspartic acid
>
Cysteine
>
glutamic acid
>
Glutamine
>
Glycine
>
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
Num :
Any
1
2
3
4
5
> 5
First Sphere features (distance from metal)
Ligand Residue:
Any
Alanine
Arginine
Asparagine
Aspartic acid
>
Cysteine
>
glutamic acid
>
Glutamine
>
Glycine
>
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
Distance from Metal: Min
Max
Neighbor residues features
Ligand Residue:
Any
Alanine
Arginine
Asparagine
Aspartic acid
>
Cysteine
>
glutamic acid
>
Glutamine
>
Glycine
>
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
H-bonded to Neighbor Residue:
Any
Alanine
Arginine
Asparagine
Aspartic acid
>
Cysteine
>
glutamic acid
>
Glutamine
>
Glycine
>
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
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Site Features:
Metal Feature:
Ligand Feature:
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Pfam domain(s)
Cath domain(s)
Scop domain(s)
Number of ligands
EC Number
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Coordination Geometry
Coordination Number
Pattern
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Donor Atoms
Distance
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